Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs45521339 chr5:475895 C/T 0.000133 111 16.23 10.13 0 KM Plot
LAML rs4559843 chr14:90747488 T/C 9.99E-6 109 12.7 21.32 1.03 KM Plot
LAML rs4584989 chr2:109319757 C/T 0.000158 111 12.17 20.27 0 KM Plot
LAML rs4640376 chr2:62576427 G/A 7.94E-5 108 16.17 10.63 0 KM Plot
LAML rs4640902 chr6:127551376 A/G 3.29E-5 108 0.98 16.2 15.2 KM Plot
LAML rs4643754 chr4:4725613 T/C 1.81E-6 111 4.1 20.77 12.65 KM Plot
LAML rs4660681 chr1:43353775 G/C 0.000186 109 15.23 10.67 1.02 KM Plot
LAML rs4660682 chr1:43354542 C/G 0.000186 109 15.23 10.67 1.02 KM Plot
LAML rs4670932 chr2:39618666 A/G 4.84E-5 111 15.7 13.7 1 KM Plot
LAML rs4675810 chr2:242442510 A/G 8.12E-5 109 1.53 14.63 17.23 KM Plot
LAML rs4675967 chr2:242242570 C/T 6.5E-5 111 1.53 16.17 16.77 KM Plot
LAML rs4696773 chr4:8170283 A/G 6.0E-5 111 0 11.17 16.17 KM Plot
LAML rs4708776 chr6:167814488 G/C 0.000136 110 0 8.1 16.27 KM Plot
LAML rs4749601 chr10:31013077 T/C 0.000176 111 1 6.58 16.2 KM Plot
LAML rs4751321 chr10:132897429 A/C 0.000155 111 0 16.2 13.1 KM Plot